In situ Hi-C on non-heat treated S2 cells (Drosophila Melanogaster) with MboI on chromosome 2R and 2L download from [4DN](https://data.4dnucleome.org/experiment-set-replicates/4DNESFOADERB/) portal (Ray J, Munn PR, et al., 2019). This data is the result of the Genomic2DTK::ImportHiC function.
Usage
data(HiC_Ctrl.cmx_lst)Format
A a list of ContactMatrix objects. Each element correspond to the interaction matrix of two chromosomes.
Examples
data(HiC_Ctrl.cmx_lst)
HiC_Ctrl.cmx_lst
#> $`2L_2L`
#> class: ContactMatrix
#> dim: 236 236
#> type: dgCMatrix
#> rownames: NULL
#> colnames: NULL
#> metadata(5): name type kind symmetric resolution
#> regions: 236
#>
#> $`2L_2R`
#> class: ContactMatrix
#> dim: 236 253
#> type: dgCMatrix
#> rownames: NULL
#> colnames: NULL
#> metadata(5): name type kind symmetric resolution
#> regions: 489
#>
#> $`2R_2R`
#> class: ContactMatrix
#> dim: 253 253
#> type: dgCMatrix
#> rownames: NULL
#> colnames: NULL
#> metadata(5): name type kind symmetric resolution
#> regions: 253
#>
#> attr(,"resolution")
#> [1] 1e+05
#> attr(,"chromSize")
#> # A tibble: 2 × 3
#> name length dimension
#> <chr> <dbl> <dbl>
#> 1 2L 23513712 236
#> 2 2R 25286936 253
#> attr(,"matricesKind")
#> # A tibble: 3 × 4
#> name type kind symmetric
#> <chr> <chr> <chr> <lgl>
#> 1 2L_2L cis U TRUE
#> 2 2L_2R trans NA FALSE
#> 3 2R_2R cis U TRUE
#> attr(,"mtx")
#> [1] "obs"